The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

Bayesian Optimization is a useful tool for experiment design. Unfortunately, the classical, sequential setting of Bayesian Optimization does not translate well into laboratory experiments, for instance battery design, where measurements may come from different sources and their evaluations may require significant waiting times. Multi-fidelity Bayesian Optimization addresses the setting with measurements from different sources. Asynchronous batch Bayesian Optimization provides a framework to select new experiments before the results of the prior experiments are revealed. This paper proposes an algorithm combining multi-fidelity and asynchronous batch methods. We empirically study the algorithm behavior, and show it can outperform single-fidelity batch methods and multi-fidelity sequential methods. As an application, we consider designing electrode materials for optimal performance in pouch cells using experiments with coin cells to approximate battery performance.

Large language models (LLMs) have been shown to be able to perform new tasks based on a few demonstrations or natural language instructions. While these capabilities have led to widespread adoption, most LLMs are developed by resource-rich organizations and are frequently kept from the public. As a step towards democratizing this powerful technology, we present BLOOM, a 176B-parameter open-access language model designed and built thanks to a collaboration of hundreds of researchers. BLOOM is a decoder-only Transformer language model that was trained on the ROOTS corpus, a dataset comprising hundreds of sources in 46 natural and 13 programming languages (59 in total). We find that BLOOM achieves competitive performance on a wide variety of benchmarks, with stronger results after undergoing multitask prompted finetuning. To facilitate future research and applications using LLMs, we publicly release our models and code under the Responsible AI License.

Tree Ensembles可以非常适合黑盒优化任务，例如算法调整和神经体系结构搜索，因为它们在几乎没有手动调整的情况下实现了良好的预测性能，自然可以处理离散的功能空间，并且对培训中的异常值相对不敏感数据。在使用树的组合进行黑盒优化方面面临的两个众所周知的挑战是（i）有效地量化模型的不确定性，以进行探索，以及（ii）优化在零件的恒定采集函数上。为了同时解决这两个点，我们建议在获得模型方差估计之前使用树的内核解释为高斯过程，并为采集函数开发兼容的优化公式。后者进一步使我们能够通过考虑工程设置中的域知识和建模搜索空间对称性，例如神经体系结构搜索中的层次结构关系，从而无缝整合已知约束，以提高采样效率。我们的框架以及最先进的方法以及对连续/离散功能的不受限制的黑框优化，并且优于结合混合变量特征空间和已知输入约束的问题的竞争方法。

语言模型既展示了定量的改进，又展示了新的定性功能，随着规模的增加。尽管它们具有潜在的变革性影响，但这些新能力的特征却很差。为了为未来的研究提供信息，为破坏性的新模型能力做准备，并改善社会有害的效果，至关重要的是，我们必须了解目前和近乎未来的能力和语言模型的局限性。为了应对这一挑战，我们介绍了超越模仿游戏基准（Big Bench）。 Big Bench目前由204个任务组成，由132家机构的442位作者贡献。任务主题是多样的，从语言学，儿童发展，数学，常识性推理，生物学，物理学，社会偏见，软件开发等等。 Big-Bench专注于被认为超出当前语言模型的功能的任务。我们评估了OpenAI的GPT型号，Google内部密集变压器体系结构和大型基础上的开关稀疏变压器的行为，跨越了数百万到数十亿个参数。此外，一个人类专家评估者团队执行了所有任务，以提供强大的基准。研究结果包括：模型性能和校准都随规模改善，但绝对的术语（以及与评估者的性能相比）；在模型类中的性能非常相似，尽管带有稀疏性。逐渐和预测的任务通常涉及大量知识或记忆成分，而在临界规模上表现出“突破性”行为的任务通常涉及多个步骤或组成部分或脆性指标；社交偏见通常会随着含糊不清的环境而随着规模而增加，但这可以通过提示来改善。

由于强烈的非线性系统行为和多个竞争目标，能源系统优化问题很复杂，例如，经济增益与环境影响。此外，大量输入变量和不同的变量类型，例如，连续和分类，是现实世界应用中常见的挑战。在某些情况下，提出的最佳解决方案需要遵守与物理性质或安全关键操作条件相关的显式输入限制。本文提出了一种新的数据驱动策略，使用树集合用于对黑匣子问题的约束多目标优化，与模型或未知的基础系统动态太复杂的异构变量空间。在由合成基准和相关能源应用组成的广泛案例研究中，我们展示了与其他最先进的工具相比，所提出的算法的竞争性能和采样效率，使其成为一个有用的全能解决方案 - 世界申请有限评价预算。

Pennylane是用于量子计算机可区分编程的Python 3软件框架。该库为近期量子计算设备提供了统一的体系结构，支持量子和连续变化的范例。 Pennylane的核心特征是能够以与经典技术（例如反向传播）兼容的方式来计算变异量子电路的梯度。因此，Pennylane扩展了在优化和机器学习中常见的自动分化算法，以包括量子和混合计算。插件系统使该框架与任何基于门的量子模拟器或硬件兼容。我们为硬件提供商提供插件，包括Xanadu Cloud，Amazon Braket和IBM Quantum，允许Pennylane优化在公开访问的量子设备上运行。在古典方面，Pennylane与加速的机器学习库（例如Tensorflow，Pytorch，Jax和Autograd）接口。 Pennylane可用于优化变分的量子本素体，量子近似优化，量子机学习模型和许多其他应用。

Despite the impact of psychiatric disorders on clinical health, early-stage diagnosis remains a challenge. Machine learning studies have shown that classifiers tend to be overly narrow in the diagnosis prediction task. The overlap between conditions leads to high heterogeneity among participants that is not adequately captured by classification models. To address this issue, normative approaches have surged as an alternative method. By using a generative model to learn the distribution of healthy brain data patterns, we can identify the presence of pathologies as deviations or outliers from the distribution learned by the model. In particular, deep generative models showed great results as normative models to identify neurological lesions in the brain. However, unlike most neurological lesions, psychiatric disorders present subtle changes widespread in several brain regions, making these alterations challenging to identify. In this work, we evaluate the performance of transformer-based normative models to detect subtle brain changes expressed in adolescents and young adults. We trained our model on 3D MRI scans of neurotypical individuals (N=1,765). Then, we obtained the likelihood of neurotypical controls and psychiatric patients with early-stage schizophrenia from an independent dataset (N=93) from the Human Connectome Project. Using the predicted likelihood of the scans as a proxy for a normative score, we obtained an AUROC of 0.82 when assessing the difference between controls and individuals with early-stage schizophrenia. Our approach surpassed recent normative methods based on brain age and Gaussian Process, showing the promising use of deep generative models to help in individualised analyses.

Artificial intelligence methods including deep neural networks (DNN) can provide rapid molecular classification of tumors from routine histology with accuracy that matches or exceeds human pathologists. Discerning how neural networks make their predictions remains a significant challenge, but explainability tools help provide insights into what models have learned when corresponding histologic features are poorly defined. Here, we present a method for improving explainability of DNN models using synthetic histology generated by a conditional generative adversarial network (cGAN). We show that cGANs generate high-quality synthetic histology images that can be leveraged for explaining DNN models trained to classify molecularly-subtyped tumors, exposing histologic features associated with molecular state. Fine-tuning synthetic histology through class and layer blending illustrates nuanced morphologic differences between tumor subtypes. Finally, we demonstrate the use of synthetic histology for augmenting pathologist-in-training education, showing that these intuitive visualizations can reinforce and improve understanding of histologic manifestations of tumor biology.

使用相对比心脏磁共振成像（PC-CMR）进行的流量分析可以量化用于评估心血管功能的重要参数。该分析的重要部分是鉴定正确的CMR视图和质量控制（QC），以检测可能影响流量定量的伪像。我们提出了一个新型的基于深度学习的框架，用于对完整CMR扫描的流量进行完全自动化的分析，该框架首先使用两个顺序卷积神经网络进行这些视图选择和QC步骤，然后进行自动主动脉和肺动脉分段，以实现对量化的量化。钥匙流参数。对于观察分类和QC，获得了0.958和0.914的精度值。对于细分，骰子分数为$> $ 0.969，而平淡的altman情节表示手动和自动峰流量值之间的一致性很高。此外，我们在外部验证数据集上测试了管道，结果表明管道的鲁棒性。这项工作是使用由986例病例组成的多生临床数据进行的，表明在临床环境中使用该管道的潜力。